Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0804597.9b.29a.26a with 1 members (heat shock)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

... /

Panarthropoda / Arthropoda / Mandibulata / Pancrustacea / Hexapoda / Neoptera /

Paraneoptera /

Completeness score: 0.20

‹

This HOG has 78 similar HOGs:

Loading, please wait...

Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0804597.8b	42	236	heat shock
2	HOG:E0804597.8b.27a	41	43	heat shock
3	HOG:E0804597.8b.28b	39	47	heat shock
4	HOG:E0764819	16	21	Heat shock 70 kDa protein
5	HOG:E0804597.8b.26a	13	19	heat shock
6	HOG:E0804597.8b.26a.19c	4	4	heat shock
7	HOG:E0804597.8b.19b	3	11	heat shock
8	HOG:E0804597.9b.29a.27b.17b	2	61	heat shock
9	HOG:E0804597.9b.29a.26b	2	67	heat shock
10	HOG:E0804597.9b.29a	2	640	heat shock
11	HOG:E0804597.8b.24a	2	2	heat shock
12	HOG:E0804597.8b.23b	2	2	heat shock
13	HOG:E0804597.8b.23a	2	2	heat shock
14	HOG:E0764819.1b	2	4	Heat shock 70 kDa protein
15	HOG:E0268546	2	9	Heat shock protein 70
16	HOG:E0807084	1	4	-
17	HOG:E0804597.9c	1	2	heat shock
18	HOG:E0804597.9b.29b	1	7	heat shock
19	HOG:E0804597.9b.29a.27c.18a.21b	1	58	heat shock
20	HOG:E0804597.9b.29a.27b.17a	1	1	heat shock
21	HOG:E0804597.9b.29a.27b.13b	1	1	heat shock
22	HOG:E0804597.9b.29a.27b	1	160	heat shock
23	HOG:E0804597.9b.29a.25c	1	1	heat shock
24	HOG:E0804597.9b.29a.25b	1	1	heat shock
25	HOG:E0804597.9b.29a.24a	1	2	heat shock

Showing 1 to 25 of 78 rows rows per page